PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084651.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 425aa    MW: 46628.6 Da    PI: 8.7807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-114671227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_011084651.1 46 GEPDCSYYIRTGLCRFGSTCRFNHPP 71
                    6899********************97 PP

2zf-CCCH382.7e-1292116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_011084651.1  92 QSECQYYLKTGTCKFGATCKFHHPR 116
                     679********************96 PP

3zf-CCCH36.67.4e-12140162527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C +++r+G+Ck+G++CkF+H++
  XP_011084651.1 140 ECAYYMRNGQCKFGSTCKFHHPQ 162
                     7********************97 PP

4zf-CCCH38.71.7e-12286312127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ CkF+H++
  XP_011084651.1 286 PGQPECQFYMKTGDCKFGAVCKFHHPR 312
                     5789*********************96 PP

5zf-CCCH38.12.5e-12332358127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_011084651.1 332 PGEPLCVFYSRYGICKFGPSCKFDHPM 358
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4834472IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-54471IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-54972IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-45070IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-589116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.41889117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-692118IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-1092116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-595116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094135163IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6138163IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502285313IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6285312IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9287312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.58E-6289315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5291313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15331359IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7331358IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9333358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5334358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4336356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSRVSVTAVA SSASSIHLQP HHQDALWQMN TTREQIDSGP YPVREGEPDC SYYIRTGLCR  60
FGSTCRFNHP PNRKLAIATA RMKGEYPERI GQSECQYYLK TGTCKFGATC KFHHPRDKAG  120
IAGRVALNVL GYPLRPNEIE CAYYMRNGQC KFGSTCKFHH PQPSNMMVSV RGSAVYPPIH  180
SPTAGQLSFP LSRASFIPSP RWQSPSSYAP LVMPQGVVSV PGWNTYSGQL GSVLSSENQH  240
PAAGNSQKDG GSLQNETGDA GTQFHSGSLP MGYYAFQRDN VFPERPGQPE CQFYMKTGDC  300
KFGAVCKFHH PRERLIPVPD CILSPIGLPL RPGEPLCVFY SRYGICKFGP SCKFDHPMTV  360
FGYNAGASSS TDSPAIRRFL ASSSGTVALS FSPDRLVEAG STNNRRLSLS ETRQKPSGDN  420
NIDSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084651.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A022RI830.0A0A022RI83_ERYGU; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1